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When non-Arab Muslims acquired control of the Nile delta, friction arose in Upper Egypt. In the 9th century the Turkish Ṭūlūnid rulers of Egypt, wishing to rid themselves of the unruly nomadic Arab tribes in their domain, encouraged them to migrate southward. Lured by the prospects of gold in the Nubian Desert, the nomads pressed into Nubia, raiding and pillaging along the borders, but the heartland of Maqurrah remained free from direct hostilities until the Mamlūks established their control over Egypt (1250). In the late 13th and early 14th centuries, the Mamlūk sultans sent regular military expeditions against Maqurrah, as much to rid Egypt of uncontrollable Arab Bedouin as to capture Nubia. The Mamlūks never succeeded in actually occupying Maqurrah, but they devastated the country, draining its political and economic vitality and plunging it into chaos and depression. By the 15th century Dunqulah was no longer strong enough to withstand Arab encroachment, and the country was open to Arab immigration. Once the Arab nomads, particularly the Juhaynah people, learned that the land beyond the Aswān reach could support their herds and that no political authority had the power to turn them back, they began to migrate southward, intermarrying with the Nubians and introducing Arab Muslim culture to the Christian inhabitants. The Arabs, who inherited through the male line, soon acquired control from the Nubians, who inherited through the female line, intermarriage resulting in Nubian inheritances passing from Nubian women to their half-Arab sons, but the Arabs replaced political authority in Maqurrah only with their own nomadic institutions. From Dunqulah the Juhaynah and others wandered east and west of the Nile with their herds; in the south the kingdom of ʿAlwah stood as the last indigenous Christian barrier to Arab occupation of the Sudan.

ʿAlwah extended from Kabūshiyyah as far south as Sennar (Sannār). Beyond, from the Ethiopian escarpment to the White Nile, lived peoples about which little is known. ʿAlwah appears to have been much more prosperous and stronger than Maqurrah. It preserved the ironworking techniques of Kush, and its capital at Sūbah possessed many impressive buildings, churches, and gardens. Christianity remained the state religion, but ʿAlwah’s long isolation from the Christian world had probably resulted in bizarre and syncretistic accretions to liturgy and ritual. ʿAlwah was able to maintain its integrity so long as the Arabs failed to combine against it, but the continuous and corrosive raids of the Bedouin throughout the 15th century clearly weakened its power to resist. Thus, when an Arab confederation led by ʿAbd Allāh Jammāʿ was at last brought together to assault the Christian kingdom, ʿAlwah collapsed (c. 1500). Sūbah and the Blue Nile region were abandoned, left to the Funj, who suddenly appeared, seemingly from nowhere, to establish their authority from Sennar to the main Nile.

The Funj

The Funj were neither Arabs nor Muslims, and their homeland was probably on the upper Blue Nile in the borderlands between Ethiopia and the Sudan. Under their leader ʿAmārah Dūnqas, the Funj founded their capital at Sennar and throughout the 16th century struggled for control of the Al-Jazīrah (Gezira) region against the Arab tribes who had settled around the confluence of the Blue and the White Niles. The Funj appear to have firmly established their supremacy by 1607–08.

By the mid-17th century the Funj dynasty had reached its golden age under one of its greatest kings, Bādī II Abū Daqn (reigned 1644/45–80), who extended Funj authority across the White Nile into Kordofan and reduced the tribal chieftaincies scattered northward along the main Nile to tribute-paying feudatories. But as Bādī II expanded Funj power, he also planted the seeds of its decline. During his conquests, slaves were captured and taken to Sennar, where, as they grew in numbers and influence, they formed a military caste. Loyal to the monarch alone, the slaves soon came to compete with the Funj aristocracy for control of the offices of state. Intrigue and hostility between these two rival groups soon led to open rebellion that undermined the position of the traditional ruling class.

Under Bādī IV Abū Shulūkh (reigned 1724–62), the ruling aristocracy was finally broken, and the king assumed arbitrary power, supported by his slave troops. So long as Bādī IV could command the loyalty of his army, his position was secure and the kingdom enjoyed respite from internal strife, but at the end of his long reign he could no longer control the army. Under the leadership of his viceroy in Kordofan, Abū Likaylik, the military turned against the king and exiled him to Sūbah. Abū Likaylik probably represented a resurgence of older indigenous elements who had been Arabized and Islamized but were neither Arab nor Funj. Thenceforward the Funj kings were but puppets of their viziers (chief ministers), whose struggles to win and to keep control precipitated the kingdom’s steady decline, interrupted by only infrequent periods of peace and stability established by a strong vizier who was able to overcome his rivals. During its last half century the Funj kingdom was a spent state, kept intact only through want of a rival but gradually disintegrating through wars, intrigue, and conspiracy, until the Egyptians advanced on Sennar in 1821 and pushed the Funj dynasty into oblivion.

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The spread of Islam

The Funj were originally non-Muslims, but the aristocracy soon adopted Islam and, although they retained many traditional African customs, remained nominal Muslims. The conversion was largely the work of a handful of Islamic missionaries who came to the Sudan from the larger Muslim world. The great success of these missionaries, however, was not among the Funj themselves but among the Arabized Nubian population settled along the Nile. Among these villagers the missionaries instilled a deep devotion to Islam that appears to have been conspicuously absent among the nomadic Arabs who had first reached the Sudan after the collapse of the kingdom of Maqurrah. One early missionary was Ghulām Allāh ibn ʿĀʾid from Yemen, who settled at Dunqulah in the 14th century. He was followed in the 15th century by Ḥamad Abū Danana, who appears to have emphasized the way to God through mystical exercises rather than through the more orthodox interpretations of the Qurʾān taught by Ghulām Allāh.

The spread of Islam was advanced in the 16th century when the hegemony of the Funj enhanced security. In the 16th and 17th centuries, numerous schools of religious learning were founded along the White Nile, and the Shāyqiyyah confederacy was converted. Many of the more famous Sudanese missionaries who followed them were Sufi holy men, members of influential religious brotherhoods who sought the way to God through mystical contemplation. The Sufi brotherhoods played a vital role in linking the Sudan to the larger world of Islam beyond the Nile valley. Although the fervour of Sudanese Islam waned after 1700, the great reform movements that shook the Muslim world in the late 18th and early 19th centuries produced a revivalist spirit among the Sufi brotherhoods, giving rise to a new order, the Mīrghāniyyah or Khatmiyyah, later one of the strongest in the modern Sudan.

The “missionaries” were faqīhs (Islamic jurists) who attracted a following through their teachings and piety and laid the foundations for a long line of indigenous Sudanese holy men. They passed on the way to God taught them by their masters or founded their own religious schools or, if extraordinarily successful, gathered their own following into a religious order. The faqīhs played a vital role in educating their followers and helped place them in the highest positions of government, which allowed them to spread Islam and the influence of their respective brotherhoods. The faqīhs held a religious monopoly until the introduction, under Egyptian-Ottoman rule (see below), of an official hierarchy of jurists and scholars—the ʿulamāʾ, whose orthodox legalistic conception of Islam was as alien to the Sudanese as were their origins. This disparity between the mystical, traditional faqīhs (close to the Sudanese, if not of them) and the orthodox ʿulamāʾ (aloof, if not actually part of the government bureaucracy) created a rivalry that produced open hostility in times of trouble and sullen suspicion in times of peace. This schism has since diminished; the faqīhs continue their customary practices unmolested, while the Sudanese have acknowledged the position of the ʿulamāʾ in society.

Egyptian-Ottoman rule

Muḥammad ʿAlī and his successors

In July 1820 Muḥammad ʿAlī, viceroy of Egypt under the Ottoman Empire, sent an army under his son Ismāʿīl to conquer the Sudan. Muḥammad ʿAli was interested in the gold and slaves that the Sudan could provide and wished to control the vast hinterland south of Egypt. By 1821 the Funj and the sultan of Darfur had surrendered, and the Nilotic Sudan from Nubia to the Ethiopian foothills and from the Atbara River to Darfur became part of Muḥammad ʿAlī’s expanding empire.

The collection of taxes under Muḥammad ʿAlī’s regime amounted to virtual confiscation of gold, livestock, and slaves, and opposition to his rule became intense, eventually erupting into rebellion and the murder of Ismāʿīl and his bodyguard. But the rebels lacked leadership and coordination, and their revolt was brutally suppressed. A sullen hostility in the Sudanese was met by continued repression until the appointment of ʿAlī Khūrshīd Āghā as governor-general in 1826. His administration marked a new era in Egyptian-Sudanese relations. He reduced taxes and consulted the Sudanese through the respected Sudanese leader ʿAbd al-Qādir wad al-Zayn. Letters of amnesty were granted to fugitives. A more equitable system of taxation was implemented, and the support of the powerful class of holy men and sheikhs (tribal chiefs) for the administration was obtained by exempting them from taxation. But ʿAlī Khūrshīd was not content merely to restore the Sudan to its previous condition. Under his initiative, trade routes were protected and expanded, Khartoum was developed as the administrative capital, and a host of agricultural and technical improvements were undertaken. When he retired to Cairo in 1838, he left a prosperous and contented country behind him.

His successor, Aḥmad Pasha Abū Widān, continued his policies with but few exceptions and made it his primary concern to root out official corruption. Abū Widān dealt ruthlessly with offenders or those who sought to thwart his schemes to reorganize taxation. He was particularly fond of the army, which reaped the benefits of regular pay and tolerable conditions in return for bearing the brunt of the expansion and consolidation of Egyptian administration in Kassalā and among the Baqqārah Arabs of southern Kordofan. Muḥammad ʿAlī, suspecting Abū Widān of disloyalty, recalled him to Cairo in the autumn of 1843, but he died mysteriously, many believed of poison, before he left the Sudan.

During the next two decades the country stagnated because of ineffective government at Khartoum and vacillation by the viceroys at Cairo. If the successors of Abū Widān possessed administrative talent, they were seldom able to demonstrate it. No governor-general held office long enough to introduce his own plans, let alone carry on those of his predecessor. New schemes were never begun, and old projects were allowed to languish. Without direction the army and the bureaucracy became demoralized and indifferent, while the Sudanese became disgruntled with the government. In 1856 the viceroy Saʿīd Pasha visited the Sudan and, shocked by what he saw, contemplated abandoning it altogether. Instead, he abolished the office of governor-general and had each Sudanese province report directly to the viceregal authority in Cairo. This state of affairs persisted until Saʿīd’s death in 1863.

During these quiescent decades, however, two ominous developments began that presaged future problems. Reacting to pressure from the Western powers, particularly Great Britain, the governor-general of the Sudan was ordered to halt the slave trade. But not even the viceroy himself could overcome established custom with the stroke of a pen and the erection of a few police posts. If the restriction of the slave trade precipitated resistance among the Sudanese, the appointment of Christian officials to the administration and the expansion of the European Christian community in the Sudan caused open resentment. European merchants, mostly of Mediterranean origin, were either ignored or tolerated by the Sudanese and confined their contacts to compatriots within their own community and to the Turko-Egyptian officials whose manners and dress they frequently adopted. They became a powerful and influential group, whose lasting contribution to the Sudan was to take the lead in opening the White Nile and the southern Sudan to navigation and commerce after Muḥammad ʿAlī had abolished state trading monopolies in the Sudan in 1838 under pressure from the European powers.