Gastrulation does not always proceed exactly as described above. In the course of evolution, certain animal groups have modified this critical stage of embryonic development, and these modifications have undoubtedly contributed to the successful continuation of species. In the primitive fishlike chordate amphioxus, for example, the invaginating blastoderm eventually comes into close contact with the inner surface of the ectoderm, thus practically squeezing the blastocoel out of existence or at least reducing it to a narrow crevice between the ectoderm and the endomesoderm. In echinoderms, on the other hand, a smaller portion of the blastoderm invaginates, and the blastocoel remains as a spacious internal cavity between the ectoderm and the endomesoderm. It persists as the primary body cavity and is the only body cavity (apart from the cavity of the alimentary canal) in such invertebrates as nematodes and rotifers.

In the double-walled-cup stage, the two internal germinal layers—endoderm and mesoderm—may not yet be distinct. Their separation may occur later, in the second phase of gastrulation, by one of two methods. One is the development of outpocketings from the wall of the archenteron. In starfishes and other echinoderms, the deep part of the endomesodermal invagination forms two thin-walled sacs, one on each side of the gastrula. These are the rudiments of the mesoderm; the remaining part of the archenteron becomes the endoderm and produces the lining of the gut. The cavities within the mesodermal sacs expand to become the coelom, the secondary body cavity of the animal. A somewhat similar process of mesoderm and coelom development occurs in amphioxus among the chordates, except that a series of mesodermal sacs forms on either side of the embryo, foreshadowing the segmented (metameric) structure common to chordates. Only the most anterior pairs of the mesodermal sacs actually contain a cavity at the time of their formation; the more posterior ones are solid masses of cells separating from the archenteric wall and from one another and developing coelomic cavities later.

A second method of mesoderm formation is by the splitting off of mesodermal cells from the original common mass of endomesoderm. This may take the form of single cells detaching themselves from the archenteron or of whole sheets of cells splitting off from the endoderm. An example of the latter type is seen in the gastrulation of amphibians. The development of specific regions of the early amphibian embryo—by the use of natural pigmentation or artificially introduced dyes—can be followed and their location in the adult recorded in diagrams called fate maps. The fate map of a frog blastula just prior to gastrulation demonstrates that the materials for the various organs of the embryo are not yet in the position corresponding to that in which the organs will lie in a fully developed animal. The endodermal material for the foregut, for example, lies not far from the vegetal pole; the ectodermal component of the mouth region (stomodeum) is situated close to the animal pole. Extensive rearrangement of the embryo is necessary to bring all the parts into their correct relationships.

Because of the large amount of yolk and resulting uneven cleavage, gastrulation in amphibians cannot proceed by a simple infolding of the vegetal hemisphere. A certain amount of invagination does take place, assisted by an active spreading of the animal hemisphere of the embryo; as a result, the ectoderm covers the endodermal and mesodermal areas. The spreading is sometimes described as an “overgrowth”—an inappropriate term, since no growth or increase of mass is involved. The future ectoderm simply thins out, expands, and covers a greater surface of the embryo in a movement known as epiboly.

Gastrulation in amphibians, in lungfishes, and in the cyclostomes (hagfishes and lampreys) begins with the formation of a pit on what will become the back (dorsal) side of the embryo. The pit represents the active shifting inward of the cells of the blastoderm. As these cells undergo a change in shape, there occurs also a contraction at the external surface, with adjacent cells being drawn toward the centre of the contraction even before an actual depression is formed. The cells most concerned in this process will become part of the future foregut. Further movement of the cells inward results in the formation of a distinct pit, which rapidly develops into a pocket-like archenteron with its opening, the blastopore. Once the archenteron is formed, more and more of the exterior cells roll over the edge of the blastopore and disappear into the interior. In the course of gastrulation the shape of the blastopore changes from a simple pit to a transverse slit and finally into a groove encircling the yolky material at the vegetal pole. As a result of epiboly of the animal hemisphere, the upper edge of the groove is gradually pushed down until the yolky cells of the vegetal pole are covered completely. The edges of the blastopore then converge toward the vegetal pole, the slit between them being eventually reduced to a narrow canal, which lies at the posterior end of the embryo and, in some species, becomes the anal opening. (In other cases the canal closes, and a new anal opening breaks through nearby, slightly more ventrally.)

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excretion: Animals

The cavity of the archenteron increases as more material from the outside is transferred inward, and the blastocoel becomes almost completely obliterated. Both mesoderm and endoderm are shifted into the interior, and only the ectoderm remains on the embryo surface. The mesoderm splits from the endoderm: the endoderm lines the archenteric cavity (and eventually becomes the lining of the alimentary canal), as the mesoderm surrounds the endoderm to form the chordamesodermal mantle. By the time the blastopore closes, the three germ layers are in their correct spatial relationship to each other.